IL_9OGY_011

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9OGY|1|2|U|172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|G|145
9OGY|1|2|G|146
9OGY|1|2|A|147
9OGY|1|2|U|148
9OGY|1|2|A|149
9OGY|1|2|A|150
9OGY|1|2|C|151
*
9OGY|1|2|G|167
9OGY|1|2|C|168
9OGY|1|2|U|169
9OGY|1|2|A|170
9OGY|1|2|A|171
9OGY|1|2|U|172
9OGY|1|2|A|173
9OGY|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6

Chain Z

eS24