IL_9OGY_017

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9OGY|1|2|U|361, 9OGY|1|2|C|399, 9OGY|1|2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|U|359
9OGY|1|2|A|360
9OGY|1|2|U|361
9OGY|1|2|C|362
9OGY|1|2|A|363
9OGY|1|2|A|364
*
9OGY|1|2|U|396
9OGY|1|2|G|397
9OGY|1|2|A|398
9OGY|1|2|C|399
9OGY|1|2|C|400
9OGY|1|2|A|401
9OGY|1|2|C|402
9OGY|1|2|G|403

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8

Chain M

Ribosomal protein S11

Chain Y

uS12