IL_9OGY_027
3D structure
- PDB id
- 9OGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAG*CGAGGAUC
- Length
- 11 nucleotides
- Bulged bases
- 9OGY|1|2|G|588
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OGY_027 not in the Motif Atlas
- Homologous match to IL_9PN5_168
- Geometric discrepancy: 0.3424
- The information below is about IL_9PN5_168
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02511.3
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9OGY|1|2|G|563
9OGY|1|2|A|564
9OGY|1|2|G|565
*
9OGY|1|2|C|585
9OGY|1|2|G|586
9OGY|1|2|A|587
9OGY|1|2|G|588
9OGY|1|2|G|589
9OGY|1|2|A|590
9OGY|1|2|U|591
9OGY|1|2|C|592
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- Ribosomal protein S9 (Predicted)
- Chain f
- 40S ribosomal protein S30
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