IL_9OGY_030
3D structure
- PDB id
- 9OGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9OGY|1|2|A|628, 9OGY|1|2|U|630, 9OGY|1|2|U|631
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OGY_030 not in the Motif Atlas
- Homologous match to IL_9H3G_187
- Geometric discrepancy: 0.2569
- The information below is about IL_9H3G_187
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9OGY|1|2|G|611
9OGY|1|2|U|612
9OGY|1|2|G|613
9OGY|1|2|C|614
9OGY|1|2|C|615
9OGY|1|2|A|616
9OGY|1|2|G|617
*
9OGY|1|2|C|624
9OGY|1|2|G|625
9OGY|1|2|G|626
9OGY|1|2|U|627
9OGY|1|2|A|628
9OGY|1|2|A|629
9OGY|1|2|U|630
9OGY|1|2|U|631
9OGY|1|2|C|632
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal protein S3
- Chain Y
- uS12
- Chain f
- 40S ribosomal protein S30
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