IL_9OGY_036

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

ACU*GGAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OGY_036 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3605

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_70784.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9OGY|1|2|A|802
9OGY|1|2|C|803
9OGY|1|2|U|804
*
9OGY|1|2|G|859
9OGY|1|2|G|860
9OGY|1|2|A|861
9OGY|1|2|A|862
9OGY|1|2|U|863

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

eS7

Chain M

Ribosomal protein S11

Chain X

Ribosomal protein S15a