IL_9OGY_037

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OGY_037 not in the Motif Atlas

Homologous match to IL_9PN5_179

Geometric discrepancy: 0.2693

The information below is about IL_9PN5_179

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

9OGY|1|2|U|805
9OGY|1|2|U|806
9OGY|1|2|G|807
*
9OGY|1|2|C|856
9OGY|1|2|U|857
9OGY|1|2|A|858

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain M

Ribosomal protein S11

Chain X

Ribosomal protein S15a