IL_9OGY_038
3D structure
- PDB id
- 9OGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OGY_038 not in the Motif Atlas
- Homologous match to IL_9H3G_194
- Geometric discrepancy: 0.3813
- The information below is about IL_9H3G_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.4
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9OGY|1|2|G|807
9OGY|1|2|A|808
9OGY|1|2|A|809
9OGY|1|2|A|810
9OGY|1|2|A|811
9OGY|1|2|A|812
9OGY|1|2|A|813
9OGY|1|2|U|814
9OGY|1|2|U|815
*
9OGY|1|2|A|849
9OGY|1|2|C|850
9OGY|1|2|C|851
9OGY|1|2|G|852
9OGY|1|2|C|853
9OGY|1|2|A|854
9OGY|1|2|G|855
9OGY|1|2|C|856
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4
- Chain K
- Ribosomal protein S9 (Predicted)
- Chain M
- Ribosomal protein S11
- Chain X
- Ribosomal protein S15a
Coloring options: