IL_9OGY_038

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|G|807
9OGY|1|2|A|808
9OGY|1|2|A|809
9OGY|1|2|A|810
9OGY|1|2|A|811
9OGY|1|2|A|812
9OGY|1|2|A|813
9OGY|1|2|U|814
9OGY|1|2|U|815
*
9OGY|1|2|A|849
9OGY|1|2|C|850
9OGY|1|2|C|851
9OGY|1|2|G|852
9OGY|1|2|C|853
9OGY|1|2|A|854
9OGY|1|2|G|855
9OGY|1|2|C|856

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

Ribosomal protein S9 (Predicted)

Chain M

Ribosomal protein S11

Chain X

Ribosomal protein S15a