IL_9OGY_047

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9OGY|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|G|952
9OGY|1|2|C|953
9OGY|1|2|U|954
9OGY|1|2|A|955
9OGY|1|2|G|956
*
9OGY|1|2|C|967
9OGY|1|2|U|968
9OGY|1|2|U|969
9OGY|1|2|G|970
9OGY|1|2|G|971
9OGY|1|2|A|972
9OGY|1|2|C|973
9OGY|1|2|C|974

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain P

Ribosomal protein S14