IL_9OGY_051
3D structure
- PDB id
- 9OGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OGY_051 not in the Motif Atlas
- Geometric match to IL_3IGI_015
- Geometric discrepancy: 0.3427
- The information below is about IL_3IGI_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02020.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
9OGY|1|2|C|1098
9OGY|1|2|G|1099
9OGY|1|2|A|1100
9OGY|1|2|U|1101
9OGY|1|2|G|1102
9OGY|1|2|C|1103
*
9OGY|1|2|G|1129
9OGY|1|2|G|1130
9OGY|1|2|G|1131
9OGY|1|2|C|1132
9OGY|1|2|A|1133
9OGY|1|2|G|1134
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- uS2 (SA)
- Chain C
- 40S ribosomal protein S3a
- Chain O
- Ribosomal protein S13
- Chain S
- eS17
- Chain b
- eS26
- Chain c
- 40S ribosomal protein S27
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