IL_9OGY_056

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OGY_056 not in the Motif Atlas

Homologous match to IL_9PN5_199

Geometric discrepancy: 0.3691

The information below is about IL_9PN5_199

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9OGY|1|2|G|1235
9OGY|1|2|G|1236
*
9OGY|1|2|C|1521
9OGY|1|2|A|1522
9OGY|1|2|C|1523

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

uS19

Chain T

uS13