IL_9OGY_065
3D structure
- PDB id
- 9OGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CUG*CG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OGY_065 not in the Motif Atlas
- Homologous match to IL_9PN5_211
- Geometric discrepancy: 0.2043
- The information below is about IL_9PN5_211
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_41261.1
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
9OGY|1|2|C|1363
9OGY|1|2|U|1364
9OGY|1|2|G|1365
*
9OGY|1|2|C|1374
9OGY|1|2|G|1375
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- uS2 (SA)
- Chain S
- eS17
- Chain b
- eS26
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