IL_9OGY_070

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OGY_070 not in the Motif Atlas

Geometric match to IL_8CRE_448

Geometric discrepancy: 0.168

The information below is about IL_8CRE_448

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9OGY|1|2|A|1537
9OGY|1|2|C|1538
9OGY|1|2|U|1539
*
9OGY|1|2|A|1594
9OGY|1|2|U|1595
9OGY|1|2|U|1596

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein S5

Chain R

Ribosomal protein S16

Chain T

uS13

Chain U

eS19

Chain a

eS25