IL_9OGY_086

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAG*UAC

Length

6 nucleotides

Bulged bases

9OGY|1|A|A|9168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OGY_086 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2653

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9OGY|1|A|G|9167
9OGY|1|A|A|9168
9OGY|1|A|G|9169
*
9OGY|1|A|U|9252
9OGY|1|A|A|9253
9OGY|1|A|C|9254

Current chains

Chain A

Megrivirus E 3' IRES RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA