IL_9OJM_004

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAG*UCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OJM_004 not in the Motif Atlas

Geometric match to IL_8GLP_063

Geometric discrepancy: 0.2855

The information below is about IL_8GLP_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

9OJM|1|A|U|674
9OJM|1|A|A|675
9OJM|1|A|G|676
*
9OJM|1|A|U|921
9OJM|1|A|C|922
9OJM|1|A|A|923

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain J

28S ribosomal protein S12, mitochondrial

Chain O

28S ribosomal protein S18b, mitochondrial