IL_9OJM_010
3D structure
- PDB id
- 9OJM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial 28S PIC with tRNA and mtIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAUCAA*UCAAAACG
- Length
- 14 nucleotides
- Bulged bases
- 9OJM|1|A|U|758, 9OJM|1|A|A|782
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OJM_010 not in the Motif Atlas
- Geometric match to IL_4LFB_011
- Geometric discrepancy: 0.1148
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.6
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9OJM|1|A|C|756
9OJM|1|A|A|757
9OJM|1|A|U|758
9OJM|1|A|C|759
9OJM|1|A|A|760
9OJM|1|A|A|761
*
9OJM|1|A|U|779
9OJM|1|A|C|780
9OJM|1|A|A|781
9OJM|1|A|A|782
9OJM|1|A|A|783
9OJM|1|A|A|784
9OJM|1|A|C|785
9OJM|1|A|G|786
Current chains
- Chain A
- 12S mitochondrial RNA
Nearby chains
- Chain 0
- Small ribosomal subunit protein mS34
- Chain 3
- Small ribosomal subunit protein mS38
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain L
- Small ribosomal subunit protein uS15m
- Chain N
- Small ribosomal subunit protein uS17m
Coloring options: