IL_9OJM_018

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

9OJM|1|A|C|904, 9OJM|1|A|C|906, 9OJM|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OJM_018 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.2947

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9OJM|1|A|G|887
9OJM|1|A|U|888
9OJM|1|A|G|889
9OJM|1|A|C|890
9OJM|1|A|C|891
9OJM|1|A|A|892
9OJM|1|A|G|893
*
9OJM|1|A|C|900
9OJM|1|A|G|901
9OJM|1|A|G|902
9OJM|1|A|U|903
9OJM|1|A|C|904
9OJM|1|A|A|905
9OJM|1|A|C|906
9OJM|1|A|A|907
9OJM|1|A|C|908

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain 7

Translation initiation factor IF-2, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial

Chain Z

Small ribosomal subunit protein mS33