IL_9OJM_040
3D structure
- PDB id
- 9OJM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial 28S PIC with tRNA and mtIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAAA*UAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OJM_040 not in the Motif Atlas
- Geometric match to IL_4LFB_067
- Geometric discrepancy: 0.2176
- The information below is about IL_4LFB_067
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
9OJM|1|A|C|1274
9OJM|1|A|A|1275
9OJM|1|A|A|1276
9OJM|1|A|A|1277
*
9OJM|1|A|U|1298
9OJM|1|A|A|1299
9OJM|1|A|A|1300
9OJM|1|A|G|1301
Current chains
- Chain A
- 12S mitochondrial RNA
Nearby chains
- Chain 1
- Small ribosomal subunit protein mS35
- Chain B
- Small ribosomal subunit protein uS2m
- Chain C
- 28S ribosomal protein S24, mitochondrial
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain G
- Small ribosomal subunit protein uS9m
Coloring options: