IL_9OJM_044

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

G(B8T)C(5MC)*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8T, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OJM_044 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.144

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9OJM|1|A|G|1485
9OJM|1|A|B8T|1486
9OJM|1|A|C|1487
9OJM|1|A|5MC|1488
*
9OJM|1|A|G|1562
9OJM|1|A|U|1563
9OJM|1|A|A|1564
9OJM|1|A|A|1565
9OJM|1|A|C|1566

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain 3

Small ribosomal subunit protein mS38

Chain 5

RNA (71-MER)

Chain 6

mRNA (5'-R(P*AP*UP*GP*U)-3')