IL_9P7G_126

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9P7G|1|L5|A|4385, 9P7G|1|L5|C|4386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7G_126 not in the Motif Atlas

Homologous match to IL_8GLP_131

Geometric discrepancy: 0.1291

The information below is about IL_8GLP_131

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9P7G|1|L5|G|3916
9P7G|1|L5|A|3917
*
9P7G|1|L5|U|4384
9P7G|1|L5|A|4385
9P7G|1|L5|C|4386
9P7G|1|L5|C|4387

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Pt

Transfer RNA; tRNA