IL_9P8B_216
3D structure
- PDB id
- 9P8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human eEF1A-A/T-P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- AG(OMG)GCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9P8B_216 not in the Motif Atlas
- Homologous match to IL_9PN5_171
- Geometric discrepancy: 0.0602
- The information below is about IL_9PN5_171
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 14
Unit IDs
9P8B|1|S2|A|599
9P8B|1|S2|G|600
9P8B|1|S2|OMG|601
9P8B|1|S2|G|602
9P8B|1|S2|C|603
9P8B|1|S2|A|604
9P8B|1|S2|A|605
9P8B|1|S2|G|606
*
9P8B|1|S2|C|636
9P8B|1|S2|U|637
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- Small ribosomal subunit protein eS30
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