IL_9P8H_212

3D structure

PDB id

9P8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8H|1|S2|A|599
9P8H|1|S2|G|600
9P8H|1|S2|OMG|601
9P8H|1|S2|G|602
9P8H|1|S2|C|603
9P8H|1|S2|A|604
9P8H|1|S2|A|605
9P8H|1|S2|G|606
*
9P8H|1|S2|C|636
9P8H|1|S2|U|637

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CH

Endothelial differentiation-related factor 1

Chain SC

40S ribosomal protein S2

Chain SJ

40S ribosomal protein S9