IL_9P8I_086

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9P8I|1|L5|A|1960

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|L5|U|1957
9P8I|1|L5|A|1958
9P8I|1|L5|U|1959
9P8I|1|L5|A|1960
9P8I|1|L5|G|1961
9P8I|1|L5|A|1962
9P8I|1|L5|C|1963
9P8I|1|L5|A|1964
9P8I|1|L5|G|1965
*
9P8I|1|L5|C|2022
9P8I|1|L5|C|2023
9P8I|1|L5|G|2024
9P8I|1|L5|A|2025
9P8I|1|L5|A|2026

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Lm

Large ribosomal subunit protein eL40

Chain Ls

60S acidic ribosomal protein P0