IL_9P8I_235

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

AGG(PSU)(PSU)C*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|S2|A|1042
9P8I|1|S2|G|1043
9P8I|1|S2|G|1044
9P8I|1|S2|PSU|1045
9P8I|1|S2|PSU|1046
9P8I|1|S2|C|1047
*
9P8I|1|S2|G|1071
9P8I|1|S2|U|1072
9P8I|1|S2|U|1073

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LA

60S ribosomal protein L8

Chain SO

Small ribosomal subunit protein uS11

Chain Sa

40S ribosomal protein S26