IL_9PA7_109

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9PA7|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|C|2867
9PA7|1|L5|G|2868
9PA7|1|L5|U|2869
9PA7|1|L5|A|2870
9PA7|1|L5|A|2871
9PA7|1|L5|C|2872
*
9PA7|1|L5|G|2877
9PA7|1|L5|G|2878
9PA7|1|L5|A|2879
9PA7|1|L5|U|2880
9PA7|1|L5|A|2881
9PA7|1|L5|A|2882
9PA7|1|L5|G|2883

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA