IL_9PBE_035

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9PBE|1|L5|G|748, 9PBE|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|G|745
9PBE|1|L5|A|746
9PBE|1|L5|A|747
9PBE|1|L5|G|748
9PBE|1|L5|G|749
9PBE|1|L5|U|750
9PBE|1|L5|G|751
9PBE|1|L5|G|752
*
9PBE|1|L5|U|911
9PBE|1|L5|G|912
9PBE|1|L5|U|913
9PBE|1|L5|U|914
9PBE|1|L5|A|915
9PBE|1|L5|C|916
9PBE|1|L5|A|917
9PBE|1|L5|G|918
9PBE|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a