IL_9PGM_040

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9PGM|1|A|A|2926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PGM_040 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.1088

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

9PGM|1|A|G|2733
9PGM|1|A|A|2734
*
9PGM|1|A|U|2925
9PGM|1|A|A|2926
9PGM|1|A|C|2927
9PGM|1|A|C|2928

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Ax

P/P-tRNA

Chain n

Nascent polypeptide