IL_9PIJ_115

3D structure

PDB id

9PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

9PIJ|1|a|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PIJ_115 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.0523

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9PIJ|1|a|G|1432
9PIJ|1|a|A|1433
9PIJ|1|a|A|1434
9PIJ|1|a|G|1435
*
9PIJ|1|a|C|1557
9PIJ|1|a|C|1558
9PIJ|1|a|U|1559
9PIJ|1|a|G|1560
9PIJ|1|a|C|1561

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2