IL_9PJ7_009

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

9PJ7|1|A|A|130, 9PJ7|1|A|A|131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_009 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.2674

The information below is about IL_6CZR_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9PJ7|1|A|U|129
9PJ7|1|A|A|130
9PJ7|1|A|A|131
9PJ7|1|A|C|132
*
9PJ7|1|A|G|233
9PJ7|1|A|A|234

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20