IL_9PJ7_020
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGACG*CGGUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ7_020 not in the Motif Atlas
- Homologous match to IL_6CZR_130
- Geometric discrepancy: 0.1823
- The information below is about IL_6CZR_130
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.3
- Basepair signature
- cWW-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9PJ7|1|A|U|448
9PJ7|1|A|G|449
9PJ7|1|A|A|450
9PJ7|1|A|C|451
9PJ7|1|A|G|452
*
9PJ7|1|A|C|465
9PJ7|1|A|G|466
9PJ7|1|A|G|467
9PJ7|1|A|U|468
9PJ7|1|A|A|469
9PJ7|1|A|A|470
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain P
- 30S ribosomal protein S16
Coloring options: