IL_9PJ7_023
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUGAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9PJ7|1|A|G|514, 9PJ7|1|A|U|516, 9PJ7|1|A|A|517
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ7_023 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.3028
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9PJ7|1|A|G|497
9PJ7|1|A|PSU|498
9PJ7|1|A|G|499
9PJ7|1|A|C|500
9PJ7|1|A|C|501
9PJ7|1|A|A|502
9PJ7|1|A|G|503
*
9PJ7|1|A|C|510
9PJ7|1|A|G|511
9PJ7|1|A|G|512
9PJ7|1|A|U|513
9PJ7|1|A|G|514
9PJ7|1|A|A|515
9PJ7|1|A|U|516
9PJ7|1|A|A|517
9PJ7|1|A|C|518
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain G
- 30S ribosomal protein S3
- Chain L
- 30S ribosomal protein S12
- Chain Y
- mRNA 32MF
Coloring options: