IL_9PJ7_072

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGAG*CUGUGAUC

Length

13 nucleotides

Bulged bases

9PJ7|1|a|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_072 not in the Motif Atlas

Geometric match to IL_6UFG_001

Geometric discrepancy: 0.2057

The information below is about IL_6UFG_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

9PJ7|1|a|G|80
9PJ7|1|a|G|81
9PJ7|1|a|G|82
9PJ7|1|a|A|83
9PJ7|1|a|G|84
*
9PJ7|1|a|C|97
9PJ7|1|a|U|98
9PJ7|1|a|G|99
9PJ7|1|a|U|100
9PJ7|1|a|G|101
9PJ7|1|a|A|102
9PJ7|1|a|U|103
9PJ7|1|a|C|104

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24

Chain x

50S ribosomal protein L29