IL_9PJ7_077
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ7_077 not in the Motif Atlas
- Geometric match to IL_9E6Q_007
- Geometric discrepancy: 0.1016
- The information below is about IL_9E6Q_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9PJ7|1|a|U|246
9PJ7|1|a|G|247
9PJ7|1|a|A|248
9PJ7|1|a|G|249
9PJ7|1|a|U|250
9PJ7|1|a|A|251
9PJ7|1|a|G|252
*
9PJ7|1|a|C|260
9PJ7|1|a|G|261
9PJ7|1|a|A|262
9PJ7|1|a|A|263
9PJ7|1|a|A|264
9PJ7|1|a|G|265
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain k
- 50S ribosomal protein L15
Coloring options: