IL_9PJ7_115
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AUGAGUAG*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ7_115 not in the Motif Atlas
- Homologous match to IL_7A0S_045
- Geometric discrepancy: 0.1184
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9PJ7|1|a|A|1339
9PJ7|1|a|U|1340
9PJ7|1|a|G|1341
9PJ7|1|a|A|1342
9PJ7|1|a|G|1343
9PJ7|1|a|U|1344
9PJ7|1|a|A|1345
9PJ7|1|a|G|1346
*
9PJ7|1|a|U|2194
9PJ7|1|a|G|2195
9PJ7|1|a|A|2196
9PJ7|1|a|A|2197
9PJ7|1|a|A|2198
9PJ7|1|a|U|2199
9PJ7|1|a|U|2200
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain p
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
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