IL_9PJ7_133

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_133 not in the Motif Atlas

Geometric match to IL_9E6Q_063

Geometric discrepancy: 0.0476

The information below is about IL_9E6Q_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

9PJ7|1|a|G|1850
9PJ7|1|a|G|1851
9PJ7|1|a|A|1852
9PJ7|1|a|A|1853
*
9PJ7|1|a|U|2176
9PJ7|1|a|C|2177

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14