IL_9PJ7_137

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAGC*GUGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_137 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.186

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9PJ7|1|a|U|1894
9PJ7|1|a|G|1895
9PJ7|1|a|A|1896
9PJ7|1|a|G|1897
9PJ7|1|a|C|1898
*
9PJ7|1|a|G|1927
9PJ7|1|a|U|1928
9PJ7|1|a|G|1929
9PJ7|1|a|A|1930
9PJ7|1|a|G|1931

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA