IL_9PJ7_142

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9PJ7|1|a|A|2082, 9PJ7|1|a|A|2083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_142 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.1718

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9PJ7|1|a|U|2024
9PJ7|1|a|G|2025
*
9PJ7|1|a|U|2081
9PJ7|1|a|A|2082
9PJ7|1|a|A|2083
9PJ7|1|a|A|2084

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2