IL_9PJ7_157

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_157 not in the Motif Atlas

Geometric match to IL_8TSV_001

Geometric discrepancy: 0.2452

The information below is about IL_8TSV_001

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9PJ7|1|a|U|2583
9PJ7|1|a|G|2584
9PJ7|1|a|G|2585
*
9PJ7|1|a|C|2596
9PJ7|1|a|G|2597

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L33

Chain 2

Large ribosomal subunit protein bL35

Chain k

50S ribosomal protein L15