IL_9PJ7_170
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ7_170 not in the Motif Atlas
- Homologous match to IL_7A0S_094
- Geometric discrepancy: 0.0918
- The information below is about IL_7A0S_094
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9PJ7|1|a|U|2834
9PJ7|1|a|U|2835
9PJ7|1|a|A|2836
9PJ7|1|a|G|2837
9PJ7|1|a|U|2838
9PJ7|1|a|A|2839
9PJ7|1|a|C|2840
*
9PJ7|1|a|G|2845
9PJ7|1|a|G|2846
9PJ7|1|a|A|2847
9PJ7|1|a|C|2848
9PJ7|1|a|C|2849
9PJ7|1|a|G|2850
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain g
- 50S ribosomal protein L6
Coloring options: