IL_9PJ8_033

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAGGG*UGGG

Length

9 nucleotides

Bulged bases

9PJ8|1|A|G|647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_033 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.2156

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9PJ8|1|A|U|644
9PJ8|1|A|A|645
9PJ8|1|A|G|646
9PJ8|1|A|G|647
9PJ8|1|A|G|648
*
9PJ8|1|A|U|722
9PJ8|1|A|G|723
9PJ8|1|A|G|724
9PJ8|1|A|G|725

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18