IL_9PJ8_056

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUGG*CGAAUC

Length

10 nucleotides

Bulged bases

9PJ8|1|A|G|1243, 9PJ8|1|A|A|1266, 9PJ8|1|A|U|1267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_056 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.1462

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

9PJ8|1|A|G|1241
9PJ8|1|A|U|1242
9PJ8|1|A|G|1243
9PJ8|1|A|G|1244
*
9PJ8|1|A|C|1263
9PJ8|1|A|G|1264
9PJ8|1|A|A|1265
9PJ8|1|A|A|1266
9PJ8|1|A|U|1267
9PJ8|1|A|C|1268

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S3

Chain M

Small ribosomal subunit protein uS10

Chain S

30S ribosomal protein S14 type Z