IL_9PJ8_115

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9PJ8|1|a|U|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_115 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2436

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9PJ8|1|a|U|1284
9PJ8|1|a|G|1285
9PJ8|1|a|G|1286
9PJ8|1|a|U|1287
9PJ8|1|a|G|1288
9PJ8|1|a|A|1289
9PJ8|1|a|A|1290
9PJ8|1|a|G|1291
*
9PJ8|1|a|U|1311
9PJ8|1|a|G|1312
9PJ8|1|a|G|1313
9PJ8|1|a|A|1314
9PJ8|1|a|G|1315

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22