IL_9PJ9_098
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ9_098 not in the Motif Atlas
- Geometric match to IL_8B0X_090
- Geometric discrepancy: 0.0577
- The information below is about IL_8B0X_090
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9PJ9|1|a|G|941
9PJ9|1|a|A|942
9PJ9|1|a|G|943
9PJ9|1|a|G|944
9PJ9|1|a|U|945
9PJ9|1|a|A|946
9PJ9|1|a|G|947
*
9PJ9|1|a|C|999
9PJ9|1|a|G|1000
9PJ9|1|a|A|1001
9PJ9|1|a|A|1002
9PJ9|1|a|U|1003
9PJ9|1|a|G|1004
9PJ9|1|a|C|1005
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L25
- Chain v
- 50S ribosomal protein L27
- Chain y
- 50S ribosomal protein L30
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