IL_9PJ9_115
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGGUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 9PJ9|1|a|U|1287
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ9_115 not in the Motif Atlas
- Homologous match to IL_7A0S_043
- Geometric discrepancy: 0.2534
- The information below is about IL_7A0S_043
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
9PJ9|1|a|U|1284
9PJ9|1|a|G|1285
9PJ9|1|a|G|1286
9PJ9|1|a|U|1287
9PJ9|1|a|G|1288
9PJ9|1|a|A|1289
9PJ9|1|a|A|1290
9PJ9|1|a|G|1291
*
9PJ9|1|a|U|1311
9PJ9|1|a|G|1312
9PJ9|1|a|G|1313
9PJ9|1|a|A|1314
9PJ9|1|a|G|1315
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain p
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
Coloring options: