IL_9PJ9_123

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGUC*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_123 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.229

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

9PJ9|1|a|U|1486
9PJ9|1|a|G|1487
9PJ9|1|a|U|1488
9PJ9|1|a|C|1489
*
9PJ9|1|a|G|1773
9PJ9|1|a|C|1774
9PJ9|1|a|G|1775
9PJ9|1|a|G|1776

Current chains

Chain a

23S rRNA

Nearby chains