IL_9PJ9_184
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGAUGGUAC*GGAGAGUAA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ9_184 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.0979
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9PJ9|1|b|U|71
9PJ9|1|b|G|72
9PJ9|1|b|A|73
9PJ9|1|b|U|74
9PJ9|1|b|G|75
9PJ9|1|b|G|76
9PJ9|1|b|U|77
9PJ9|1|b|A|78
9PJ9|1|b|C|79
*
9PJ9|1|b|G|98
9PJ9|1|b|G|99
9PJ9|1|b|A|100
9PJ9|1|b|G|101
9PJ9|1|b|A|102
9PJ9|1|b|G|103
9PJ9|1|b|U|104
9PJ9|1|b|A|105
9PJ9|1|b|A|106
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L25
- Chain y
- 50S ribosomal protein L30
Coloring options: