IL_9PKB_037

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9PKB|1|L5|G|748, 9PKB|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKB|1|L5|G|745
9PKB|1|L5|A|746
9PKB|1|L5|A|747
9PKB|1|L5|G|748
9PKB|1|L5|G|749
9PKB|1|L5|U|750
9PKB|1|L5|G|751
9PKB|1|L5|G|752
*
9PKB|1|L5|U|911
9PKB|1|L5|G|912
9PKB|1|L5|U|913
9PKB|1|L5|U|914
9PKB|1|L5|A|915
9PKB|1|L5|C|916
9PKB|1|L5|A|917
9PKB|1|L5|G|918
9PKB|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a