IL_9PKD_153
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- ACAU(PSU)U*ACCA(PSU)
- Length
- 11 nucleotides
- Bulged bases
- 9PKD|1|L5|C|4670, 9PKD|1|L5|C|4671
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|A|4624
9PKD|1|L5|C|4625
9PKD|1|L5|A|4626
9PKD|1|L5|U|4627
9PKD|1|L5|PSU|4628
9PKD|1|L5|U|4629
*
9PKD|1|L5|A|4669
9PKD|1|L5|C|4670
9PKD|1|L5|C|4671
9PKD|1|L5|A|4672
9PKD|1|L5|PSU|4673
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- Ribosomal protein L24
Coloring options: