IL_9PKG_023

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

9PKG|1|L5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|A|466
9PKG|1|L5|U|467
9PKG|1|L5|U|468
9PKG|1|L5|C|469
9PKG|1|L5|A|470
9PKG|1|L5|A|471
9PKG|1|L5|C|472
*
9PKG|1|L5|G|682
9PKG|1|L5|C|683
9PKG|1|L5|G|684
9PKG|1|L5|C|685
9PKG|1|L5|A|686
9PKG|1|L5|U|687
9PKG|1|L5|U|688
9PKG|1|L5|U|689

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

60S ribosomal protein L28