IL_9PKG_065

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUCGCAGACCCGAGCCACG*CG

Length

21 nucleotides

Bulged bases

9PKG|1|L5|A|1701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|C|1694
9PKG|1|L5|U|1695
9PKG|1|L5|C|1696
9PKG|1|L5|G|1697
9PKG|1|L5|C|1698
9PKG|1|L5|A|1699
9PKG|1|L5|G|1700
9PKG|1|L5|A|1701
9PKG|1|L5|C|1702
9PKG|1|L5|C|1703
9PKG|1|L5|C|1704
9PKG|1|L5|G|1705
9PKG|1|L5|A|1706
9PKG|1|L5|G|1716
9PKG|1|L5|C|1717
9PKG|1|L5|C|1718
9PKG|1|L5|A|1719
9PKG|1|L5|C|1720
9PKG|1|L5|G|1721
*
9PKG|1|L5|C|1841
9PKG|1|L5|G|1842

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29