IL_9PKG_108

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

9PKG|1|L5|G|3839

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|G|2847
9PKG|1|L5|G|2848
9PKG|1|L5|A|2849
9PKG|1|L5|A|2850
9PKG|1|L5|G|2851
9PKG|1|L5|U|2852
9PKG|1|L5|C|2853
9PKG|1|L5|G|2854
9PKG|1|L5|G|2855
*
9PKG|1|L5|C|3837
9PKG|1|L5|U|3838
9PKG|1|L5|G|3839
9PKG|1|L5|U|3840
9PKG|1|L5|OMC|3841

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23